Stem-loop ppy-mir-1179

Accession

MI0015179

Description

Pongo pygmaeus ppy-mir-1179 precursor miRNA

Sequence

ggcuggaaaggaagAAGCAUUCUUUCAUUGGCUGGuguguauugccuugucaaccaauaagaggaugccauuuauccuuuucugacuagcu
((((((((((((.((((((((((((.(((((..((((.....)))).......))))).)))))))))..))).)))))).....))))))

Structure

      -----      a   --         C     -----CU    u 
ggcugg     aaagga gAA  GCAUUCUUU AUUGG       GGug g
||||||     |||||| |||  ||||||||| |||||       |||| u
ucgauc     uuuccu uuu  cguaggaga uaacc       ccgu a
      agucu      a   ac         a     aacuguu    u 

Annotation confidence Not enough data

Genome context

chr15: 85248720-85248810 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-1179

Mature ppy-miR-1179

• Accession: MIMAT0016144
• Description: Pongo pygmaeus ppy-miR-1179 mature miRNA
• Sequence: 15 - AAGCAUUCUUUCAUUGGCUGG - 35
• Evidence: not_experimental

References

1. PubMed ID: 20214803
   Genome-wide comparative analysis of microRNAs in three non-human primates
   Brameier M
   BMC Res Notes (2010) 3:64