Stem-loop ppy-mir-1247

Accession

MI0015205

Description

Pongo pygmaeus ppy-mir-1247 precursor miRNA

Sequence

ccgcuugccucgcccagcgcagccccggccgcugggcgcACCCGUCCCGUUCGUCCCCGGAcguugcucucuaccccgggaacgucgagacuggagcgcccgaacugagccaccuucgcggaccccgagagcggcg
.((((.((((((.((.(((.((....(((((.(((((((.((.(((.((..(((.(((((..((........)).))))).))).)).))).)).)))))))...)).)))..)).)))))....)))).))))))

Structure

c    u  -    ---c  a   c  cccc   -  --c       A  C   C  UU   C     Ac  ugc 
 cgcu gc cucg    cc gcg ag    ggc cg   ugggcgc CC GUC CG  CGU CCCGG  gu   u
 |||| || ||||    || ||| ||    ||| ||   ||||||| || ||| ||  ||| |||||  ||    
 gcgg cg gagc    gg cgc uc    ccg gu   gcccgcg gg cag gc  gca gggcc  ca   c
-    -  a    ccca  -   u  --ca   a  caa       a  u   a  -u   a     -c  ucu 

Annotation confidence Not enough data

Genome context

chr14: 103149042-103149177 [-]

Mature ppy-miR-1247

• Accession: MIMAT0016172
• Description: Pongo pygmaeus ppy-miR-1247 mature miRNA
• Sequence: 40 - ACCCGUCCCGUUCGUCCCCGGA - 61
• Evidence: not_experimental

References

1. PubMed ID: 20214803
   Genome-wide comparative analysis of microRNAs in three non-human primates
   Brameier M
   BMC Res Notes (2010) 3:64