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miRBase entry: ppy-mir-1281
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ppy-mir-1281
Accession
MI0015236
Description
Pongo pygmaeus
ppy-mir-1281 precursor miRNA
Sequence
agggggcaccgggaggaggugagugucucuugUCGCCUCCUCCUCUCCCcccuu
((((((....((((((((((((..........))))))))))))...)))))).
Structure
- cacc gugu aggggg gggaggagguga c |||||| |||||||||||| ucccCC UCCUCCUCCGCU u u -CUC guuc
Annotation confidence
Not enough data
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Genome context
chr22: 36346778-36346831 [+]
Database links
Mature
ppy-miR-1281
Accession
MIMAT0016202
Description
Pongo pygmaeus
ppy-miR-1281 mature miRNA
Sequence
33 - UCGCCUCCUCCUCUCCC - 49
Evidence
not_experimental
References
PubMed ID:
20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64