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miRBase entry: ppy-mir-1471
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ppy-mir-1471
Accession
MI0015271
Description
Pongo pygmaeus
ppy-mir-1471 precursor miRNA
Sequence
GCCCGCGUGUGGAGCCAGGUGUggagccggagcacagcuggcucuaauuugaggggc
((((.....(((((((((.((((.........)))).))))))))).......))))
Structure
--GCGUG G gag GCCC UGGAGCCAG UGUg c |||| ||||||||| |||| c cggg aucucgguc acac g gaguuua g gag
Annotation confidence
Not enough data
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Genome context
chr2B: 124278270-124278326 [-]
Database links
Mature
ppy-miR-1471
Accession
MIMAT0016233
Description
Pongo pygmaeus
ppy-miR-1471 mature miRNA
Sequence
1 - GCCCGCGUGUGGAGCCAGGUGU - 22
Evidence
not_experimental
References
PubMed ID:
20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64