Stem-loop sja-mir-1

Accession

MI0015282

Description

Schistosoma japonicum sja-mir-1 precursor miRNA

Literature search

11 open access papers mention sja-mir-1
(60 sentences)

Sequence

caaaaguaguauucauuauaUGGAAUGUGGCGAAGUAUGGUCuacaguugcuagaaucaucuuuauaugaagaguauucacuuuu
.(((((((((((((.((((((((((((((((((.(((.....)))..))))))....))).))))))))).))))))).))))))

Structure

c      -       a         -   ----      -A   U 
 aaaagu aguauuc uuauaUGGA AUG    UGGCGA  GUA G
 |||||| ||||||| ||||||||| |||    ||||||  ||| G
 uuuuca uuaugag aguauauuu uac    aucguu  cau U
-      c       a         c   uaag      ga   C 

Annotation confidence Not enough data

Genome context

CABF01001061.1: 9-93 [+]

Mature sja-miR-1

• Accession: MIMAT0016244
• Description: Schistosoma japonicum sja-miR-1 mature miRNA
• Sequence: 21 - UGGAAUGUGGCGAAGUAUGGUC - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596