Stem-loop sja-mir-2a

Accession

MI0015283

Description

Schistosoma japonicum sja-mir-2a precursor miRNA

Literature search

9 open access papers mention sja-mir-2a
(33 sentences)

Sequence

accuuuugcaccgCAGUCAAUAUUGGCUGAUGGCAuuguuuuauugUCACAGCCAGUAUUGAUGAACGggguaauagg
.(((.((((.(((..((((((((((((((.(((((.........)))))))))))))))))))...))).)))).)))

Structure

a   u    a   -CA              A     uug 
 ccu uugc ccg   GUCAAUAUUGGCUG UGGCA   u
 ||| |||| |||   |||||||||||||| |||||   u
 gga aaug gGC   UAGUUAUGACCGAC ACUgu   u
-   u    g   AAG              -     uau 

Annotation confidence Not enough data

Genome context

CABF01007682.1: 2964-3041 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from sja-mir-2a

Mature sja-miR-2a-5p

• Accession: MIMAT0016245
• Description: Schistosoma japonicum sja-miR-2a-5p mature miRNA
• Sequence: 14 - CAGUCAAUAUUGGCUGAUGGCA - 35
• Evidence: experimental ; Illumina [1]

Mature sja-miR-2a-3p

• Accession: MIMAT0016246
• Description: Schistosoma japonicum sja-miR-2a-3p mature miRNA
• Sequence: 47 - UCACAGCCAGUAUUGAUGAACG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596