Stem-loop sja-mir-7

Accession

MI0015285

Description

Schistosoma japonicum sja-mir-7 precursor miRNA

Literature search

7 open access papers mention sja-mir-7
(61 sentences)

Sequence

auguugccguugcuuaaucaUGGAAGACUGGUGAUAUGUUGUUgauugaugaaaguuuuaaguauuucauaauuuaaagcuucaucaaaacaaugauauuacgaaCAACUUAUCGCAUUCUUCCAUGuaugcaauagguugaacuuc
..(((((((((((.....(((((((((...((((((.((((((..((((((((.(((((((((........)))))))))))))))))...............)))))).))))))..)))))))))...))))).)))..)))...

Structure

-au   --   -     uuaau         CUG      U      -------------ga        a         auu 
   guu  gcc guugc     caUGGAAGA   GUGAUA GUUGUU               uugaugaa guuuuaagu   u
   |||  ||| |||||     |||||||||   |||||| ||||||               |||||||| |||||||||    
   caa  ugg uaacg     GUACCUUCU   CGCUAU CAACaa               aacuacuu cgaaauuua   c
cuu   gu   a     --uau         -UA      U      gcauuauaguaacaa        -         aua 

Annotation confidence Not enough data

Genome context

CABF01039688.1: 5408-5554 [+]

Mature sja-miR-7-5p

• Accession: MIMAT0016249
• Description: Schistosoma japonicum sja-miR-7-5p mature miRNA
• Sequence: 21 - UGGAAGACUGGUGAUAUGUUGUU - 43
• Evidence: experimental ; Illumina [1]

Mature sja-miR-7-3p

• Accession: MIMAT0016250
• Description: Schistosoma japonicum sja-miR-7-3p mature miRNA
• Sequence: 106 - CAACUUAUCGCAUUCUUCCAUG - 127
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596