Stem-loop sja-mir-10

Accession

MI0015287

Description

Schistosoma japonicum sja-mir-10 precursor miRNA

Literature search

8 open access papers mention sja-mir-10
(22 sentences)

Sequence

ccucaguaugAACCCUGUAGACCCGAGUUUGGaugccguuagaugcAAAUUCGAGUCUAUAAGGAAAGAuacuuuggaa
((..(((((...((.(((((((.((((((((.((........)).)))))))).))))))).))....)))))..))..

Structure

--  uc     -gAA  C       C        G  gcc 
  cc  aguau    CC UGUAGAC CGAGUUUG au   g
  ||  |||||    || ||||||| |||||||| ||    
  gg  ucauA    GG AUAUCUG GCUUAAAc ua   u
aa  uu     GAAA  A       A        g  gau 

Annotation confidence Not enough data

Genome context

CABF01007487.1: 6178-6256 [+]

Mature sja-miR-10-5p

• Accession: MIMAT0016253
• Description: Schistosoma japonicum sja-miR-10-5p mature miRNA
• Sequence: 11 - AACCCUGUAGACCCGAGUUUGG - 32
• Evidence: experimental ; Illumina [1]

Mature sja-miR-10-3p

• Accession: MIMAT0016254
• Description: Schistosoma japonicum sja-miR-10-3p mature miRNA
• Sequence: 47 - AAAUUCGAGUCUAUAAGGAAAGA - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596