Stem-loop sja-mir-61

Accession

MI0015290

Description

Schistosoma japonicum sja-mir-61 precursor miRNA

Literature search

3 open access papers mention sja-mir-61
(6 sentences)

Sequence

cauucuaacuuuacaucacaUGACUAGAAAGUGCACUCACUUccaucucaguacagagcaucauuuagagaaauguguccacaguaaaaauucccuauguuacguaaauuugcguaaguucaauguguauuguagauuuauua
...((((.(..((((((((((..(((((..((((.((.(((........)))..)).))))..)))))....)))))......................(((((((....))))))).......)))))..))))).......

Structure

----cau    a uu     -----------------------------------------------     --GA     AA    A  -C   Ucc 
       ucua c  uacau                                               cacaU    CUAGA  GUGC CU  ACU   a
       |||| |  |||||                                               |||||    |||||  |||| ||  |||    
       agau g  augug                                               gugua    gauuu  uacg ga  uga   u
auuauuu    - uu     uaacuugaaugcguuuaaaugcauuguaucccuuaaaaaugacaccu     aaga     ac    a  ca   cuc 

Annotation confidence Not enough data

Genome context

CABF01036171.1: 1214-1356 [+]

Mature sja-miR-61

• Accession: MIMAT0016259
• Description: Schistosoma japonicum sja-miR-61 mature miRNA
• Sequence: 21 - UGACUAGAAAGUGCACUCACUU - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596