Stem-loop sja-mir-71b

Accession

MI0015291

Description

Schistosoma japonicum sja-mir-71b precursor miRNA

Literature search

17 open access papers mention sja-mir-71b
(122 sentences)

Sequence

ccguuugcugUGAAAGACUUGAGUAGUGAGACGcuuauagcguuguugucugcgguucggcgCCUCAUACUAAGUCUUUCCCGgcucacuggc
((((..((((.(((((((((.((((.((((.((((...(.(((........))).)..)))).))))))))))))))))).))))..)).)).

Structure

-  -  uu    U         G    G    A    uau g   ugu 
 cc gu  gcug GAAAGACUU AGUA UGAG CGcu   a cgu   u
 || ||  |||| ||||||||| |||| |||| ||||   | |||    
 gg ca  cgGC CUUUCUGAA UCAU ACUC gcgg   u gcg   g
c  u  cu    C         -    -    C    -cu g   ucu 

Annotation confidence Not enough data

Genome context

CABF01011791.1: 2817-2909 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sja-mir-71b

Mature sja-miR-71b-5p

• Accession: MIMAT0016260
• Description: Schistosoma japonicum sja-miR-71b-5p mature miRNA
• Sequence: 11 - UGAAAGACUUGAGUAGUGAGACG - 33
• Evidence: experimental ; Illumina [1]

Mature sja-miR-71b-3p

• Accession: MIMAT0016261
• Description: Schistosoma japonicum sja-miR-71b-3p mature miRNA
• Sequence: 63 - CCUCAUACUAAGUCUUUCCCG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596