Stem-loop sja-mir-133

Accession

MI0015293

Description

Schistosoma japonicum sja-mir-133 precursor miRNA

Literature search

1 open access papers mention sja-mir-133
(3 sentences)

Sequence

caugcuguucuuaugagauuUUGGUCCCUAUCAACCAGCUGUaguggauagcuucaucaucagacauacuguuacuuguuuucuauaugccuuucgaauguuuuuaauauauuuacaagaauguuaguugaaauuuggaaua
.....(((.((.((((((.....((((((.............)).))))....)).)))).))))).........................((((((((...((((((((((((....))))))..))))))))))))))..

Structure

-----------------------------------------------------------------------caugc   u  u    -  uuUUG    -  AUCAA 
                                                                            ugu cu auga ga     GUCC CU     C
                                                                            ||| || |||| ||     |||| ||     C
                                                                            aca ga uacu cu     uagg ga     A
auaagguuuaaaguugauuguaagaacauuuauauaauuuuuguaagcuuuccguauaucuuuuguucauugucau   -  c    a  -ucga    u  UGUCG 

Annotation confidence Not enough data

Genome context

CABF01070535.1: 1141-1282 [+]

Mature sja-miR-133

• Accession: MIMAT0016264
• Description: Schistosoma japonicum sja-miR-133 mature miRNA
• Sequence: 21 - UUGGUCCCUAUCAACCAGCUGU - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596