Stem-loop sja-mir-2162

Accession

MI0015299

Description

Schistosoma japonicum sja-mir-2162 precursor miRNA

Sequence

cuaggggaugAGUGAGAUUGUUGCAUAUUUACAuugcugguaugUAUUAUGCAACGUUUCACUCUacuccgggga
((.((((..(((((((((.((((((((..(((((.......))))).)))))))))))))))))..)))).))..

Structure

--  a    au         U        UU     ug 
  cu gggg  gAGUGAGAU GUUGCAUA  UACAu  c
  || ||||  ||||||||| ||||||||  |||||  u
  gg ccuc  CUCACUUUG CAACGUAU  AUgua  g
ag  g    aU         -        -U     ug 

Annotation confidence Not enough data

Genome context

CABF01030669.1: 1637-1711 [-]

Mature sja-miR-2162-5p

• Accession: MIMAT0016272
• Description: Schistosoma japonicum sja-miR-2162-5p mature miRNA
• Sequence: 11 - AGUGAGAUUGUUGCAUAUUUACA - 33
• Evidence: experimental ; Illumina [1]

Mature sja-miR-2162-3p

• Accession: MIMAT0016273
• Description: Schistosoma japonicum sja-miR-2162-3p mature miRNA
• Sequence: 45 - UAUUAUGCAACGUUUCACUCU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596