Stem-loop sja-mir-2c

Accession

MI0015301

Description

Schistosoma japonicum sja-mir-2c precursor miRNA

Literature search

7 open access papers mention sja-mir-2c
(24 sentences)

Sequence

uucaggcgcaACCCUUGUUCGACUGUGAUGUGauugaaauuagcccaUAUCACAGCCGUGCUUAAGGGCuucgucgaaa
(((.((((...(((((((.((.((((((((((.............)))))))))).)).))..)))))...))))))).

Structure

-   a    caA     --  U  A          auuga 
 uuc ggcg   CCCUU  GU CG CUGUGAUGUG     a
 ||| ||||   |||||  || || ||||||||||     a
 aag cugc   GGGAA  CG GC GACACUAUac     u
a   -    uuC     UU  U  C          ccgau 

Annotation confidence Not enough data

Genome context

CABF01011791.1: 3159-3237 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sja-mir-2c

Mature sja-miR-2c-5p

• Accession: MIMAT0016276
• Description: Schistosoma japonicum sja-miR-2c-5p mature miRNA
• Sequence: 11 - ACCCUUGUUCGACUGUGAUGUG - 32
• Evidence: experimental ; Illumina [1]

Mature sja-miR-2c-3p

• Accession: MIMAT0016277
• Description: Schistosoma japonicum sja-miR-2c-3p mature miRNA
• Sequence: 48 - UAUCACAGCCGUGCUUAAGGGC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596