Stem-loop sja-mir-2d

Accession

MI0015302

Description

Schistosoma japonicum sja-mir-2d precursor miRNA

Literature search

7 open access papers mention sja-mir-2d
(23 sentences)

Sequence

cgaccaguucGUCAUCCAUGGAUUGUGAUUUUcggacuccauguuucauuaagugaaUAUCACAGUCCUGCUUAGGUGAcgaauuucgu
(((..(((((((((((((.((((((((((.(((..(((..(((...)))..)))))).))))))))))))....)))))))))))))).

Structure

-   cc           ----  U          U   gg   cc   u 
 cga  aguucGUCAUC    CA GGAUUGUGAU UUc  acu  aug  
 |||  |||||||||||    || |||||||||| |||  |||  ||| u
 gcu  uuaagcAGUGG    GU CCUGACACUA aag  uga  uac  
u   --           AUUC  -          U   --   au   u 

Annotation confidence Not enough data

Genome context

CABF01011791.1: 3049-3137 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sja-mir-2d

Mature sja-miR-2d-5p

• Accession: MIMAT0016278
• Description: Schistosoma japonicum sja-miR-2d-5p mature miRNA
• Sequence: 11 - GUCAUCCAUGGAUUGUGAUUUU - 32
• Evidence: experimental ; Illumina [1]

Mature sja-miR-2d-3p

• Accession: MIMAT0016279
• Description: Schistosoma japonicum sja-miR-2d-3p mature miRNA
• Sequence: 58 - UAUCACAGUCCUGCUUAGGUGA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596