Stem-loop sja-mir-3480

Accession

MI0015303

Description

Schistosoma japonicum sja-mir-3480 precursor miRNA

Sequence

agugacggcuGCAGGAGUUUGAUUUCACAUgugaguaccgccugggAAACAGACAUACCAAUGCAGauguucucuc
...((((.(((((((.(((((.((((.((.(((.....))).)).)))))))))...))..))))).)))).....

Structure

--agu    g     --  --A     A    A  U   a 
     gacg cuGCA  GG   GUUUG UUUC CA gug g
     |||| |||||  ||   ||||| |||| || ||| u
     uugu GACGU  CC   CAGAC AAAg gu cgc a
cucuc    a     AA  AUA     -    g  c   c 

Annotation confidence Not enough data

Genome context

CABF01004722.1: 651-726 [+]

Mature sja-miR-3480-5p

• Accession: MIMAT0016280
• Description: Schistosoma japonicum sja-miR-3480-5p mature miRNA
• Sequence: 11 - GCAGGAGUUUGAUUUCACAU - 30
• Evidence: experimental ; Illumina [1]

Mature sja-miR-3480-3p

• Accession: MIMAT0016281
• Description: Schistosoma japonicum sja-miR-3480-3p mature miRNA
• Sequence: 47 - AAACAGACAUACCAAUGCAG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596