Stem-loop sja-mir-3485

Accession

MI0015308

Description

Schistosoma japonicum sja-mir-3485 precursor miRNA

Sequence

ggcuuuuaccaacuuGCGUCACUUGUGGUGUAGGCGAgacauucGUUUACUGACGAAAGGACGCAUuuacugugca
((......))....((((((..((((.(.((((((((.....))))))))).))))...))))))...........

Structure

ggcuuuuaccaacu      -AC    G U        g 
              uGCGUC   UUGU G GUAGGCGA a
              ||||||   |||| | |||||||| c
              ACGCAG   AGCA U CAUUUGcu a
---acgugucauuU      GAA    G -        u 

Annotation confidence Not enough data

Genome context

CABF01014360.1: 997-1072 [+]

Mature sja-miR-3485-5p

• Accession: MIMAT0016290
• Description: Schistosoma japonicum sja-miR-3485-5p mature miRNA
• Sequence: 16 - GCGUCACUUGUGGUGUAGGCGA - 37
• Evidence: experimental ; Illumina [1]

Mature sja-miR-3485-3p

• Accession: MIMAT0016291
• Description: Schistosoma japonicum sja-miR-3485-3p mature miRNA
• Sequence: 45 - GUUUACUGACGAAAGGACGCAU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596