miRBase entry: sja-mir-3489

Stem-loop sja-mir-3489


Accession
MI0015313
Description
Schistosoma japonicum sja-mir-3489 precursor miRNA


Sequence

caauuguuccucaccucaauuggugucgcugacucugcacgagaugaaggugcggugGCCACAACAGUUCGAGGACGgggacgucaa
.....((((((..(((((((((.(((.((((...((((((.........)))))))))).))).))))).))))..)))))).....

Structure
caauu      ca    -     g   c    acu      gag 
     guuccu  ccuc aauug ugu gcug   cugcac   a
     ||||||  |||| ||||| ||| ||||   ||||||   u
     cagggG  GGAG UUGAC ACA CGgu   ggcgug   g
aacug      CA    C     A   C    ---      gaa 


Annotation confidence Not enough data
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Genome context
CABF01025875.1: 5672-5758 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sja-mir-3489
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sja-miR-3489

Accession MIMAT0016298
Description Schistosoma japonicum sja-miR-3489 mature miRNA
Sequence 58 - GCCACAACAGUUCGAGGACG - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596