Stem-loop sja-mir-3501

Accession

MI0015325

Description

Schistosoma japonicum sja-mir-3501 precursor miRNA

Sequence

aaguguuuacAACCUUGUAGUUUCGUUGUGgaaaugguaaccauucgggaaaccuaccuggcggauacugcuaauggcaugacaccc
..(((((.....((..((((((((((((.((....(((..((....))...)))..))))))))).)))))....))...)))))..

Structure

aa     uacAA  --UU     -       U  aaau   -aa  a 
  guguu     CC    GUAGU UUCGUUG Gg    ggu   cc u
  |||||     ||    ||||| ||||||| ||    |||   ||  
  cacag     gg    cguca aggcggu cc    cca   gg u
cc     --uac  uaau     u       -  --au   aag  c 

Annotation confidence Not enough data

Genome context

CABF01042703.1: 1547-1633 [-]

Mature sja-miR-3501

• Accession: MIMAT0016310
• Description: Schistosoma japonicum sja-miR-3501 mature miRNA
• Sequence: 11 - AACCUUGUAGUUUCGUUGUG - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596