Stem-loop sja-mir-3504

Accession

MI0015328

Description

Schistosoma japonicum sja-mir-3504 precursor miRNA

Sequence

uauuuacaugcuucucccugucccccacaucuugcggacauuccagguacugauauuaauuguugGUGUGGUUGUCAGAAGGGGCaucggucccg
.......((((((((..(((.(..(((((((..((((..((..(((...)))..))...)))).)))))))..).))).))))))))........

Structure

-uauuuac        cc   u cc       uu    -ac  uc   g 
        augcuucu  cug c  ccacauc  gcgg   au  cag  
        ||||||||  ||| |  |||||||  ||||   ||  ||| u
        uaCGGGGA  GAC G  GGUGUGg  uguu   ua  guc  
gcccuggc        -A   U UU       -u    aau  ua   a 

Annotation confidence Not enough data

Genome context

CABF01039793.1: 407-501 [+]

Mature sja-miR-3504

• Accession: MIMAT0016313
• Description: Schistosoma japonicum sja-miR-3504 mature miRNA
• Sequence: 66 - GUGUGGUUGUCAGAAGGGGC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596