Stem-loop rlcv-mir-rL1-34

Accession

MI0015355

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-34 precursor miRNA

Sequence

caaacaaggcuguagccuuUAGAUGGCGUAACAGGCAACUuguguaugaggccaagUUAGCCCGAACCGCUAUCCAUAugcugcugcuccaucuc
.......(((.(((((.....(((((((...(.(((((((((.((.....)))))))).))).)...))))))).....))))).))).......

Structure

caaacaa   u     cuuUA       UAA A   -      u  a 
       ggc guagc     GAUGGCG   C GGC AACUug gu u
       ||| |||||     |||||||   | ||| |||||| || g
       ucg cgucg     CUAUCGC   G CCG UUgaac cg a
cucuacc   u     uAUAC       CAA C   A      -  g 

Annotation confidence Low

Genome context

Unknown

Mature rlcv-miR-rL1-34-5p

• Accession: MIMAT0016960
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-34-5p mature miRNA
• Sequence: 20 - UAGAUGGCGUAACAGGCAACU - 40
• Evidence: experimental ; Illumina [1-2]

Mature rlcv-miR-rL1-34-3p

• Accession: MIMAT0016961
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-34-3p mature miRNA
• Sequence: 57 - UUAGCCCGAACCGCUAUCCAUA - 78
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


2. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635