Stem-loop bra-MIR2111a

Accession

MI0015372

Description

Brassica rapa bra-MIR2111a precursor miRNA

Literature search

1 open access papers mention bra-MIR2111a
(1 sentences)

Sequence

cagaugacaaguauuggugaggaccgggUAAUCUGCAUCCUGAGGUUUAaagcuugauuauacgcauaacaugccgacgcauauaacuauguguuuuagaauagcuuuuaGUCCUCGGGAUGCGGAUUACCucuuccuuacuauacguacacgguuacaug
((..((((..(((((((((((((..((((((((((((((((((((...((((((.......(((((((..((((....)))).....)))))))........))))))....))))))))))))))))))))..)))))))))...))))...))))..))

Structure

  ga    -aa    ---         cc                    -UUU      -ugauuau       ---ac    c 
ca  ugac   guau   uggugagga  gggUAAUCUGCAUCCUGAGG    Aaagcu        acgcaua     augc g
||  ||||   ||||   |||||||||  ||||||||||||||||||||    ||||||        |||||||     ||||  
gu  auug   caug   aucauuccu  uCCAUUAGGCGUAGGGCUCC    uuucga        uguguau     uacg a
  ac    gca    cau         uc                    UGau      uaagauuu       caaua    c 

Annotation confidence Not enough data

Genome context

chrA3: 15829023-15829183 [-]

Mature bra-miR2111a-5p

• Accession: MIMAT0016368
• Description: Brassica rapa bra-miR2111a-5p mature miRNA
• Sequence: 29 - UAAUCUGCAUCCUGAGGUUUA - 49
• Evidence: not_experimental

Mature bra-miR2111a-3p

• Accession: MIMAT0016369
• Description: Brassica rapa bra-miR2111a-3p mature miRNA
• Sequence: 111 - GUCCUCGGGAUGCGGAUUACC - 131
• Evidence: not_experimental

References

1. PubMed ID: 19854858
   Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
   "Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ"
   "Plant Physiol (2009) 151:2120-2132