Stem-loop rno-mir-3541

Accession

MI0015395

Description

Rattus norvegicus rno-mir-3541 precursor miRNA

Literature search

2 open access papers mention rno-mir-3541
(2 sentences)

Sequence

460 reads, 1.0 reads per million, 195 experiments

gcucaggacugcccagUGUGCAGUGGUGUGAGGAGGGGGCguauccuaggcaucacacuaccucUCCCUCCCCCUCACUGCACAGaguugggcuggucacagcc
(((...((((((((((((((((((((.(.(.((((((((.(.....(((........))).).)))))))))).))))))))))...)))))).))))..))).

Structure

-   cag    -      ---          U U A        C uaucc   gca 
 gcu   gacu gcccag   UGUGCAGUGG G G GGAGGGGG g     uag   u
 |||   |||| ||||||   |||||||||| | | |||||||| |     |||    
 cga   cugg cggguu   ACACGUCACU C C CCUCCCUc c     auc   c
c   -ca    u      gaG          C - -        u ----c   aca 

Annotation confidence High

Genome context

chr2: 188487004-188487107 [+]

Mature rno-miR-3541-5p

• Accession: MIMAT0052026
• Description: Rattus norvegicus rno-miR-3541-5p mature miRNA
• Sequence: 17 - UGUGCAGUGGUGUGAGGAGGGGGC - 40
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3541-3p

• Accession: MIMAT0017795
• Description: Rattus norvegicus rno-miR-3541-3p mature miRNA
• Sequence: 65 - UCCCUCCCCCUCACUGCACAG - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249