Stem-loop rno-mir-203b

Accession

MI0015399

Description

Rattus norvegicus rno-mir-203b precursor miRNA

Literature search

29 open access papers mention rno-mir-203b
(225 sentences)

Sequence

359326 reads, 130 reads per million, 502 experiments

gcugucgccgcugccgugcgcgccgggucuAGUGGUCCUAAACAUUUCACaauugcgcuacagaacugUUGAACUGUUAAGAACCACUGGaccaggcgcgccugcacacagaagc
(((.((...(.(((.(.(((((((.(((((((((((.((.((((.((((((.((.(......))).)).)))).)))).)).))))))))))).)))))))).))))...)))))

Structure

   g  gcc c   c u       g           C  A    U    -  a  g gc 
gcu uc   g ugc g gcgcgcc ggucuAGUGGU CU AACA UUCA Ca uu c  u
||| ||   | ||| | ||||||| ||||||||||| || |||| |||| || || |   
cga ag   c acg c cgcgcgg ccaGGUCACCA GA UUGU AAGU gu aa g  a
   -  aca -   u -       a           A  A    C    U  c  - ac 

Annotation confidence High

Genome context

chr6: 136704947-136705061 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-203b

Mature rno-miR-203b-5p

• Accession: MIMAT0017799
• Description: Rattus norvegicus rno-miR-203b-5p mature miRNA
• Sequence: 31 - AGUGGUCCUAAACAUUUCAC - 50
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-203b-3p

• Accession: MIMAT0017800
• Description: Rattus norvegicus rno-miR-203b-3p mature miRNA
• Sequence: 69 - UUGAACUGUUAAGAACCACUGG - 90
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249