Stem-loop rno-mir-3546

Accession

MI0015400

Description

Rattus norvegicus rno-mir-3546 precursor miRNA

Sequence

1771 reads, 8.0 reads per million, 134 experiments

ggcugagagacgauagcuccucugaccaacAAGCUUUUUGCUCGUCUUAUACgugagagucagguAUAACCCGGGCCAAAAGCUCacccgucaaaggaaguaagcaagggucagcc
((((((.........((((((.((((.....(((((((.(((((..((((((.(((...))).))))))..))))).))))))).....)))).))).))).........))))))

Structure

      gagacgaua   -   c    caacA       U     UC      g   g 
ggcuga         gcu ccu ugac     AGCUUUU GCUCG  UUAUAC uga  
||||||         ||| ||| ||||     ||||||| |||||  |||||| ||| a
ccgacu         uga gga acug     UCGAAAA CGGGC  AAUAug acu  
      gggaacgaa   a   a    cccaC       C     CC      g   g 

Annotation confidence High

Genome context

chr15: 33613435-33613550 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-3546

Mature rno-miR-3546-5p

• Accession: MIMAT0061429
• Description: Rattus norvegicus rno-miR-3546-5p mature miRNA
• Sequence: 31 - AAGCUUUUUGCUCGUCUUAUAC - 52
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3546-3p

• Accession: MIMAT0017801
• Description: Rattus norvegicus rno-miR-3546-3p mature miRNA
• Sequence: 66 - AUAACCCGGGCCAAAAGCUC - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249