Stem-loop rno-mir-3547

Accession

MI0015401

Description

Rattus norvegicus rno-mir-3547 precursor miRNA

Literature search

1 open access papers mention rno-mir-3547
(1 sentences)

Sequence

597 reads, 16 reads per million, 110 experiments

cugacuuccaaggugggaagagggguggggcccgggacuguacccaugugaggacuauucuugagucccgcucuuguucUGAGCACCACCCCUCUCUCAGAUgguggcag
(((.((.(((...(((((.(((((((((.((.((((((.........(((.(((((.......))))))))....)))))).)).))))))))))))))..))).)))))

Structure

   a  u   agg     a         g  c      uguacccau   a     au 
cug cu cca   uggga gaggggugg gc cgggac         gug ggacu  u
||| || |||   ||||| ||||||||| || ||||||         ||| |||||  c
gac gg ggU   ACUCU CUCCCCACC CG GUcuug         cgc ccuga  u
   -  u   -AG     -         A  A      -----uucu   -     gu 

Annotation confidence Not enough data

Genome context

chr10: 14603134-14603243 [-]

Mature rno-miR-3547

• Accession: MIMAT0017802
• Description: Rattus norvegicus rno-miR-3547 mature miRNA
• Sequence: 80 - UGAGCACCACCCCUCUCUCAGAU - 102
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249