Stem-loop rno-mir-449c

Accession

MI0015402

Description

Rattus norvegicus rno-mir-449c precursor miRNA

Literature search

16 open access papers mention rno-mir-449c
(44 sentences)

Sequence

2008 reads, 18.0 reads per million, 227 experiments

aagcgugggugugucagacAGGCAGUGCAUUGCUAGCUGGCUGUUagaacuucgucccaaCAGUGGCUAGCUGCACUACCCUcugcugcacuuagaagc
..((.((((((((.((((..((.((((((..((((((..((((((.(.((...)).).)))))).)))))))))))).)).)))).))))))))...))

Structure

aa  --g        u    cA  C      UU      UG      a a  u 
  gc   ugggugug caga  GG AGUGCA  GCUAGC  GCUGUU g ac  
  ||   |||||||| ||||  || ||||||  ||||||  |||||| | || u
  cg   auucacgu gucU  CC UCACGU  CGAUCG  UGACaa c ug  
--  aag        c    -C  A      --      -G      c c  c 

Annotation confidence Medium

Genome context

chr2: 44896066-44896164 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-449c

Mature rno-miR-449c-5p

• Accession: MIMAT0017803
• Description: Rattus norvegicus rno-miR-449c-5p mature miRNA
• Sequence: 20 - AGGCAGUGCAUUGCUAGCUGGCUGUU - 45
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-449c-3p

• Accession: MIMAT0017804
• Description: Rattus norvegicus rno-miR-449c-3p mature miRNA
• Sequence: 61 - CAGUGGCUAGCUGCACUACCCU - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249