Stem-loop rno-mir-3085

Accession

MI0015403

Description

Rattus norvegicus rno-mir-3085 precursor miRNA

Literature search

2 open access papers mention rno-mir-3085
(8 sentences)

Sequence

20053 reads, 37.0 reads per million, 190 experiments

gucccuacucugggaAGGUGCCAUUCUGAAGGCCAGGAGUcugaauaugagucacUCUGGCUGCUAUGGCCCCCUCccagggcuugggc
((((...((((((((.((.(((((......((((((((.((.......)).))...))))))...))))).)).))))))))...))))

Structure

    cua        A  U     UCUGAA      ---  G  ug 
gucc   cucuggga GG GCCAU      GGCCAG   GA Uc  a
||||   |||||||| || |||||      ||||||   || ||  a
cggg   gggaccCU CC CGGUA      UCGGUC   cu ag  u
    uuc        C  C     ---UCG      Uca  g  ua 

Annotation confidence High

Genome context

chr1: 261524235-261524323 [-]

Mature rno-miR-3085-5p

• Accession: MIMAT0061430
• Description: Rattus norvegicus rno-miR-3085-5p mature miRNA
• Sequence: 16 - AGGUGCCAUUCUGAAGGCCAGGAGU - 40
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3085-3p

• Accession: MIMAT0017805
• Description: Rattus norvegicus rno-miR-3085-3p mature miRNA
• Sequence: 56 - UCUGGCUGCUAUGGCCCCCUC - 76
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249