Stem-loop rno-mir-3549

Accession

MI0015405

Description

Rattus norvegicus rno-mir-3549 precursor miRNA

Sequence

47174 reads, 3 reads per million, 469 experiments

gaaaaugccgguccugggagccgaggacugggacuuuguaggccaguugaacugacacccucAUCUUGCCCGCAAAGACCCagcucucagcucccguccgccuuggaguucg
(((....(((((..(((((((.((((.(((((.((((((.(((.((.(((..........))).)).))).)))))).))))).)))).)))))))...)))..))..))).

Structure

-   aaug  --   -cc       c    a     a      a   c  u   acug 
 gaa    cc  ggu   ugggagc gagg cuggg cuuugu ggc ag uga    a
 |||    ||  |||   ||||||| |||| ||||| |||||| ||| || |||     
 cuu    gg  ccg   gcccucg cucu gaCCC GAAACG CCG UC Acu    c
g   --ga  uu   ccu       a    c     A      C   U  U   ccca 

Annotation confidence Not enough data

Genome context

chr10: 67065885-67065996 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-3549

Mature rno-miR-3549

• Accession: MIMAT0017807
• Description: Rattus norvegicus rno-miR-3549 mature miRNA
• Sequence: 63 - AUCUUGCCCGCAAAGACCC - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249