Stem-loop rno-mir-3552

Accession

MI0015409

Description

Rattus norvegicus rno-mir-3552 precursor miRNA

Literature search

1 open access papers mention rno-mir-3552
(2 sentences)

Sequence

2784 reads, 14 reads per million, 85 experiments

ugugaauccagcugguucaAGGCUGCAGGCCCACUUCCCUuggcagauuuuuccauuucagggaguggggaaaguggcccuaaaccaucaaaauggauuauacau
((((((((((..(((((...((((((...((((((.(((((((.........)))....))))))))))....))))))...)))))......)))))).)))).

Structure

-    -      ----gc     caA      -AGG      U    ----   cag 
 ugug aaucca      ugguu   GGCUGC    CCCACU CCCU    ugg   a
 |||| ||||||      |||||   ||||||    |||||| ||||    |||   u
 acau uuaggu      accaa   ccggug    ggguga ggga    acc   u
u    a      aaaacu     auc      aaag      -    cuuu   uuu 

Annotation confidence Not enough data

Genome context

chrX: 118121374-118121478 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-3552

Mature rno-miR-3552

• Accession: MIMAT0017813
• Description: Rattus norvegicus rno-miR-3552 mature miRNA
• Sequence: 20 - AGGCUGCAGGCCCACUUCCCU - 40
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249