Stem-loop rno-mir-3553

Accession

MI0015410

Description

Rattus norvegicus rno-mir-3553 precursor miRNA

Literature search

1 open access papers mention rno-mir-3553
(1 sentences)

Sequence

489895 reads, 1 reads per million, 491 experiments

cggaucugucucugcucuguuuauggcccuucgguaauucacugaccgagacuguucaCAGUGAAUUCUACCAGUGCCAUAcacaggacaggagucacacucucug
.(((..((.((((..(((((.((((((.((..((((((((((((...(((....))).))))))))..)))))).)))))).)))))...)))).))...)))...

Structure

--c   -uc  u    -gc     u      c  uc    --        acc   a 
   gga   ug cucu   ucugu uauggc cu  ggua  auucacug   gag c
   |||   || ||||   ||||| |||||| ||  ||||  ||||||||   |||  
   ucu   ac gagg   ggaca AUACCG GA  CCAU  UAAGUGAC   cuu u
guc   cac  u    aca     c      U  --    CU        --a   g 

Annotation confidence Not enough data

Genome context

chr4: 57463572-57463677 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-3553

Mature rno-miR-3553

• Accession: MIMAT0017814
• Description: Rattus norvegicus rno-miR-3553 mature miRNA
• Sequence: 59 - CAGUGAAUUCUACCAGUGCCAUA - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249