Stem-loop rno-mir-3074

Accession

MI0015411

Description

Rattus norvegicus rno-mir-3074 precursor miRNA

Literature search

5 open access papers mention rno-mir-3074
(21 sentences)

Sequence

2076 reads, 4.0 reads per million, 317 experiments

gcuuuuugcucaagggcucgacuccUGUUCCUGCUGAACUGAGCCAGUGugugaaaugagaacuGAUAUCAGCUCAGUAGGCACCGgagggcggguccaaucacagcugggcagugc
((...(((((((.(((((((.((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))..))))))).........))))))).))

Structure

  uuu       --------a       -a    U  U        A    -GC    Gugug 
gc   uugcuca         gggcucg  cucc GU CCUGCUGA CUGA   CAGU     a
||   |||||||         |||||||  |||| || |||||||| ||||   ||||     a
cg   gacgggu         ccugggc  gagG CA GGAUGACU GACU   Guca     a
  --u       cgacacuaa       gg    C  C        C    AUA    agagu 

Annotation confidence Medium

Genome context

chr17: 823940-824056 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-3074

Mature rno-miR-3074-5p

• Accession: MIMAT0052028
• Description: Rattus norvegicus rno-miR-3074-5p mature miRNA
• Sequence: 26 - UGUUCCUGCUGAACUGAGCCAGUG - 49
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3074-3p

• Accession: MIMAT0017815
• Description: Rattus norvegicus rno-miR-3074-3p mature miRNA
• Sequence: 65 - GAUAUCAGCUCAGUAGGCACCG - 86
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249