Stem-loop rno-mir-3557

Accession

MI0015415

Description

Rattus norvegicus rno-mir-3557 precursor miRNA

Literature search

1 open access papers mention rno-mir-3557
(1 sentences)

Sequence

11321418 reads, 4 reads per million, 508 experiments

agcggggaaggugacuccacucagGCCUUCUGACUCCAAGUCCAGUgcuauuucgagguaacACACAGGACCUGGAGUCAGGAGcccuggguggcucugucacccccuggcug
(((.(((..((((((.(((((((((.((((((((((((.((((.(((.((((....)))).)))...)))).)))))))))))).)))))))))....)))))).))).))).

Structure

-   g   aa      ---u         C            A    --A   c    u 
 agc ggg  ggugac    ccacucagG CUUCUGACUCCA GUCC   GUg uauu c
 ||| |||  ||||||    ||||||||| |||||||||||| ||||   ||| ||||  
 ucg ucc  ccacug    ggugggucc GAGGACUGAGGU CAGG   CAc augg g
g   g   -c      ucuc         c            C    ACA   a    a 

Annotation confidence Not enough data

Genome context

chr18: 56726128-56726240 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-3557

Mature rno-miR-3557-5p

• Accession: MIMAT0017819
• Description: Rattus norvegicus rno-miR-3557-5p mature miRNA
• Sequence: 25 - GCCUUCUGACUCCAAGUCCAGU - 46
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3557-3p

• Accession: MIMAT0017820
• Description: Rattus norvegicus rno-miR-3557-3p mature miRNA
• Sequence: 63 - ACACAGGACCUGGAGUCAGGAG - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249