Stem-loop rno-mir-3556a

Accession

MI0015416

Description

Rattus norvegicus rno-mir-3556a precursor miRNA

Sequence

2551496 reads, 0 reads per million, 499 experiments

gcauggugcuuuuccccaaucauuauaacCGAUUUCAGAUGGUGCUAgaaaauucuauugacucugaacaccaaaagaaaucagucauccucuaaggggucacaagaggucaugugca
((((((..(((((((((..........((.((((((...(((((.((((.............))))..)))))...)))))).))..........))))....))))).))))))...

Structure

---      ug     ----    aaucauuaua  C      AGA     -C    aaauu 
   gcaugg  cuuuu    cccc          ac GAUUUC   UGGUG  UAga     c
   ||||||  |||||    ||||          || ||||||   |||||  ||||     u
   uguacu  gagaa    gggg          ug cuaaag   accac  gucu     a
acg      -g     cacu    aaucuccuac  a      aaa     aa    caguu 

Annotation confidence Not enough data

Genome context

chr4: 58343919-58344036 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-3556a

Mature rno-miR-3556a

• Accession: MIMAT0017821
• Description: Rattus norvegicus rno-miR-3556a mature miRNA
• Sequence: 30 - CGAUUUCAGAUGGUGCUA - 47
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249