Stem-loop rno-mir-291b

Accession

MI0015417

Description

Rattus norvegicus rno-mir-291b precursor miRNA

Literature search

11 open access papers mention rno-mir-291b
(55 sentences)

Sequence

310 reads, 3.0 reads per million, 57 experiments

cggaucuuggaaguuggaacacagggucCAUCAAAGUGGAGGCCCUCUCcguggcuuggcgggAAAGUGCAUCCAUUUUGUUAGUcucugugucccgcuggacucacc
..(((((....(((.(((.(((((((.(...(((((((((.((.((.(((((......)))))..)).)).)))))))))...).)))))))))).)))))).))...

Structure

-cg  -   ugga   u   a       u CAU         G  C  -C     gg 
   ga ucu    agu gga cacaggg c   CAAAGUGGA GC CU  UCcgu  c
   || |||    ||| ||| ||||||| |   ||||||||| || ||  |||||   
   cu agg    ucg ccu gugucuc G   GUUUUACCU CG GA  gggcg  u
cca  c   ----   c   -       U AUU         A  U  AA     gu 

Annotation confidence High

Genome context

chr1: 64537831-64537938 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rno-mir-291b

Mature rno-miR-291b-5p

• Accession: MIMAT0052029
• Description: Rattus norvegicus rno-miR-291b-5p mature miRNA
• Sequence: 29 - CAUCAAAGUGGAGGCCCUCUC - 49
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-291b-3p

• Accession: MIMAT0017822
• Description: Rattus norvegicus rno-miR-291b-3p mature miRNA
• Sequence: 64 - AAAGUGCAUCCAUUUUGUUAGU - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249