Stem-loop rno-mir-3596d

Accession

MI0015418

Description

Rattus norvegicus rno-mir-3596d precursor miRNA

Literature search

2 open access papers mention rno-mir-3596d
(4 sentences)

Sequence

66 reads, 4.0 reads per million, 23 experiments

acuccucagggaaggcaauagauuguauaguuaucuccuaaacaggguaaaaucacuaccccacaaCUAUACAAUCUACUACCUCAcucugauagag
.(((.((((((.(((...((((((((((((((............(((((.......)))))...))))))))))))))...)))..))))))..)))

Structure

a   -c      -a   caa              aucuccuaaaca     aa 
 cuc  ucaggg  agg   uagauuguauaguu            gggua  a
 |||  ||||||  |||   ||||||||||||||            |||||  u
 gag  agucuc  UCC   AUCUAACAUAUCaa            cccau  c
-   au      AC   AUC              ---------cac     ca 

Annotation confidence Not enough data

Genome context

chr17: 16418217-16418313 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from rno-mir-3596d

Mature rno-miR-3596d-3p

• Accession: MIMAT0017823
• Description: Rattus norvegicus rno-miR-3596d-3p mature miRNA
• Sequence: 67 - CUAUACAAUCUACUACCUCA - 86
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249