Stem-loop rno-mir-3558

Accession

MI0015420

Description

Rattus norvegicus rno-mir-3558 precursor miRNA

Sequence

380 reads, 9 reads per million, 177 experiments

gcagcuggaccuucacccgggcuguCCAUAGAAGUCAUCCCACAGUGCCuucaaggagggcaucggcACUGUGGAGGGUUUCUAUGUcagccugagugguacagauccaugcug
.((((((((.((((((.(((((((..((((((((((...((((((((((...............))))))))))..)))))))))).))))))).))))...)).)))).))))

Structure

g    -    c  ---    c       uC          AUC          uucaag 
 cagc ugga cu   ucac cgggcug  CAUAGAAGUC   CCACAGUGCC      g
 |||| |||| ||   |||| |||||||  ||||||||||   ||||||||||      a
 gucg accu ga   ggug guccgac  GUAUCUUUGG   GGUGUCAcgg      g
-    u    a  cau    a       -U          -GA          cuacgg 

Annotation confidence High

Genome context

chr6: 10992691-10992804 [+]

Mature rno-miR-3558-5p

• Accession: MIMAT0017825
• Description: Rattus norvegicus rno-miR-3558-5p mature miRNA
• Sequence: 26 - CCAUAGAAGUCAUCCCACAGUGCC - 49
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3558-3p

• Accession: MIMAT0017826
• Description: Rattus norvegicus rno-miR-3558-3p mature miRNA
• Sequence: 68 - ACUGUGGAGGGUUUCUAUGU - 87
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249