Stem-loop rno-mir-3559

Accession

MI0015421

Description

Rattus norvegicus rno-mir-3559 precursor miRNA

Literature search

5 open access papers mention rno-mir-3559
(16 sentences)

Sequence

23459 reads, 27 reads per million, 478 experiments

cucagaagaaagccuuuuucucucugcgUGACAGACUUAGUACUACAUGAuccauguuaaugaaacuaAUGUAGUACUGAGUCUGUCGUGcagugaguaaaaaaauccaaagaga
..............((((((((.(((((((((((((((((((((((((....(((....)))......))))))))))))))))))))))))).))).)))))............

Structure

cucagaagaaagcc     -   u                         --GAuc   g 
              uuuuu cuc cugcgUGACAGACUUAGUACUACAU      cau u
              ||||| ||| |||||||||||||||||||||||||      |||  
              aaaaa gag gacGUGCUGUCUGAGUCAUGAUGUA      gua u
--agagaaaccuaa     u   u                         aucaaa   a 

Annotation confidence High

Genome context

chrX: 75459241-75459355 [-]

Mature rno-miR-3559-5p

• Accession: MIMAT0017827
• Description: Rattus norvegicus rno-miR-3559-5p mature miRNA
• Sequence: 29 - UGACAGACUUAGUACUACAUGA - 50
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3559-3p

• Accession: MIMAT0017828
• Description: Rattus norvegicus rno-miR-3559-3p mature miRNA
• Sequence: 69 - AUGUAGUACUGAGUCUGUCGUG - 90
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249