Stem-loop rno-mir-3560

Accession

MI0015422

Description

Rattus norvegicus rno-mir-3560 precursor miRNA

Literature search

1 open access papers mention rno-mir-3560
(4 sentences)

Sequence

9122 reads, 0 reads per million, 453 experiments

ccucacaugcagaccaggcuuaccuucccCAAAUCCUUGCCCGGGUGCAUUgcauacaaauagcauuuucacccagggacaaaggauuagagaggacgagcagagcagaagg
(((....(((.......((((..((((.(..((((((((((((((((...(((.........)))....))))).))).).))))))).).))))..))))...)))..)))

Structure

   caca   agaccag    ac    c CA       - -   -     -CAU   aua 
ccu    ugc       gcuu  cuuc c  AAUCCUU G CCC GGGUG    Ugc   c
|||    |||       ||||  |||| |  ||||||| | ||| |||||    |||   a
gga    acg       cgag  ggag g  uuaggaa c ggg cccac    acg   a
   --ag   ----aga    ca    a -a       a a   a     uuuu   aua 

Annotation confidence Not enough data

Genome context

chrX: 16117863-16117974 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from rno-mir-3560

Mature rno-miR-3560

• Accession: MIMAT0017829
• Description: Rattus norvegicus rno-miR-3560 mature miRNA
• Sequence: 30 - CAAAUCCUUGCCCGGGUGCAUU - 51
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249