Stem-loop rno-mir-3561

Accession

MI0015423

Description

Rattus norvegicus rno-mir-3561 precursor miRNA

Sequence

70 reads, 1.0 reads per million, 55 experiments

agggcagacacucagaaccugagacugugUCAAUCCAGGGUAGACACUCAGAaccugagacugugUCUAUCCAGGGUAGACACUCAGAaccugaggcagcauauguccu
((((((....(((((...((((....(((((.((((.((((((((((((((...))))....)))))))))).)))).)))))))))...)))))........))))))

Structure

      ----gaca     aac    gacu     A    A          ----    A 
agggca        cucag   cuga    gugUC AUCC GGGUAGACAC    UCAG  
||||||        |||||   ||||    ||||| |||| ||||||||||    |||| a
uccugu        gaguc   GACU    CACAG UGGG CCUAUCUgug    aguc  
      auacgacg     caA    ----     A    A          ucag    c 

Annotation confidence Medium

Genome context

chr7: 26427720-26427828 [-]

Mature rno-miR-3561-5p

• Accession: MIMAT0017830
• Description: Rattus norvegicus rno-miR-3561-5p mature miRNA
• Sequence: 30 - UCAAUCCAGGGUAGACACUCAGA - 52
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3561-3p

• Accession: MIMAT0017831
• Description: Rattus norvegicus rno-miR-3561-3p mature miRNA
• Sequence: 66 - UCUAUCCAGGGUAGACACUCAGA - 88
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249