Stem-loop rno-mir-3065

Accession

MI0015429

Description

Rattus norvegicus rno-mir-3065 precursor miRNA

Literature search

1 open access papers mention rno-mir-3065
(1 sentences)

Sequence

398 reads, 1 reads per million, 161 experiments

gaggcuggcagcugcccucuUCAACAAAAUCACUGAUGCUggagucacugugcacccacUCAGCACCAGGAUAUUGUUGGGGAggacggccugggcagcgucg
((.((((.(.((((.((((((((((((.(((.(((.(((((.(((............)))))))).)))))).)))))))))))).))))...).)))).)).

Structure

-  g    g --a    c            A   A   A     g   cacug 
 ga gcug c   gcug ccucuUCAACAA AUC CUG UGCUg agu     u
 || |||| |   |||| |||||||||||| ||| ||| ||||| |||      
 cu cgac g   cggc ggAGGGGUUGUU UAG GAC ACGAC Uca     g
g  g    g guc    a            A   -   C     -   cccac 

Annotation confidence High

Genome context

chr10: 109195234-109195336 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-3065

Mature rno-miR-3065-5p

• Accession: MIMAT0017839
• Description: Rattus norvegicus rno-miR-3065-5p mature miRNA
• Sequence: 21 - UCAACAAAAUCACUGAUGCU - 40
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3065-3p

• Accession: MIMAT0017840
• Description: Rattus norvegicus rno-miR-3065-3p mature miRNA
• Sequence: 60 - UCAGCACCAGGAUAUUGUUGGGGA - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249