Stem-loop rno-mir-3571

Accession

MI0015440

Description

Rattus norvegicus rno-mir-3571 precursor miRNA

Literature search

1 open access papers mention rno-mir-3571
(1 sentences)

Sequence

124829 reads, 1 reads per million, 259 experiments

uuggcggacauuaccuacccaaaaUACACACUUCUUUACAUUCCAUAgcauucuauguucauauggguacauaaagaaguaugugcucugaguaggcacuauugugccgau
((((((.(.....(((((.((...((((.(((((((((...((((((((((...))))...))))))....))))))))).))))...)).)))))......).)))))).

Structure

-      g -cauua     c  aaa    C         -CAU      ---    u 
 uuggcg a      ccuac ca   UACA ACUUCUUUA    UCCAUA   gcau  
 |||||| |      ||||| ||   |||| |||||||||    ||||||   |||| c
 agccgu u      ggaug gu   gugu ugaagaaau    ggguau   ugua  
u      g uaucac     a  cuc    a         acau      acu    u 

Annotation confidence Not enough data

Genome context

chr18: 2054922-2055032 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-3571

Mature rno-miR-3571

• Accession: MIMAT0017851
• Description: Rattus norvegicus rno-miR-3571 mature miRNA
• Sequence: 25 - UACACACUUCUUUACAUUCCAUA - 47
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249