Stem-loop rno-mir-1949

Accession

MI0015441

Description

Rattus norvegicus rno-mir-1949 precursor miRNA

Literature search

4 open access papers mention rno-mir-1949
(10 sentences)

Sequence

1015 reads, 2.0 reads per million, 286 experiments

gggagaaaagcagccaauagCUGGUUGGCAUUCUGGGCCUGGuucaugccaacucuguuguuaacUAUACCAGGAUGUCAGCAUAGUUgcuuaccca
(((....(((((.......(((((((((((((((((...(((((.....((((...))))..)))))..))))))))))))).))))))))).))).

Structure

-   agaa     gccaaua    -             GCC     caugc    u 
 ggg    aagca       gCUG GUUGGCAUUCUGG   UGGuu     caac  
 |||    |||||       |||| |||||||||||||   |||||     |||| c
 ccc    uucgU       UGAU CGACUGUAGGACC   AUcaa     guug  
a   ---a     -------    A             -AU     ---uu    u 

Annotation confidence Medium

Genome context

chr18: 28353149-28353245 [+]

Mature rno-miR-1949-5p

• Accession: MIMAT0052032
• Description: Rattus norvegicus rno-miR-1949-5p mature miRNA
• Sequence: 21 - CUGGUUGGCAUUCUGGGCCUGG - 42
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-1949-3p

• Accession: MIMAT0017852
• Description: Rattus norvegicus rno-miR-1949-3p mature miRNA
• Sequence: 66 - UAUACCAGGAUGUCAGCAUAGUU - 88
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249