Stem-loop rno-mir-3572

Accession

MI0015442

Description

Rattus norvegicus rno-mir-3572 precursor miRNA

Literature search

2 open access papers mention rno-mir-3572
(2 sentences)

Sequence

496 reads, 1.0 reads per million, 180 experiments

ugccaccaguaaguggaggccaguuUGGGGGACAGGGCAAGGUGGGCaguagcugacagccuguUUACACUUGCCCUUUUUUCCCCAGgcuauaguucgguuguggca
((((((....((.((((....(((((((((((.((((((((((((((((..(((...))))))))))).))))))))...)))))))))))....)))).))))))))

Structure

      cagu  g    ggcc           --C        -        ua   g 
ugccac    aa ugga    aguuUGGGGGA   AGGGCAAG GUGGGCag  gcu  
||||||    || ||||    |||||||||||   |||||||| ||||||||  ||| a
acggug    uu gcuu    ucgGACCCCUU   UCCCGUUC CAUUuguc  cga  
      ----  g    gaua           UUU        A        --   c 

Annotation confidence High

Genome context

chr1: 64135964-64136071 [-]

Mature rno-miR-3572-5p

• Accession: MIMAT0061431
• Description: Rattus norvegicus rno-miR-3572-5p mature miRNA
• Sequence: 26 - UGGGGGACAGGGCAAGGUGGGC - 47
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3572-3p

• Accession: MIMAT0017853
• Description: Rattus norvegicus rno-miR-3572-3p mature miRNA
• Sequence: 65 - UUACACUUGCCCUUUUUUCCCCAG - 88
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249