Stem-loop rno-mir-1188

Accession

MI0015443

Description

Rattus norvegicus rno-mir-1188 precursor miRNA

Literature search

6 open access papers mention rno-mir-1188
(9 sentences)

Sequence

1259 reads, 4.0 reads per million, 102 experiments

gucucucagcUGGUGUGAGGUUGGGCCAGGAUGaaacccaaggcucUCCGAGGCUCCCCACCACACCCUGcugcugaagacu
(((((.((((.((((((..(..(((((.(((.((..(....)..)))))..)))))..)..))))))..))))..).)))).

Structure

-    - -u    -U      AG UU     -A   U  aa c 
 gucu c  cagc  GGUGUG  G  GGGCC  GGA Ga  c c
 |||| |  ||||  ||||||  |  |||||  ||| ||  |  
 caga g  gucG  CCACAC  C  CUCGG  CCU cu  g a
u    a uc    UC      CA CC     AG   -  cg a 

Annotation confidence High

Genome context

chr6: 133733578-133733659 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-1188

Mature rno-miR-1188-5p

• Accession: MIMAT0017854
• Description: Rattus norvegicus rno-miR-1188-5p mature miRNA
• Sequence: 11 - UGGUGUGAGGUUGGGCCAGGAUG - 33
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-1188-3p

• Accession: MIMAT0017855
• Description: Rattus norvegicus rno-miR-1188-3p mature miRNA
• Sequence: 47 - UCCGAGGCUCCCCACCACACCCUG - 70
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249