Stem-loop rno-mir-3575

Accession

MI0015447

Description

Rattus norvegicus rno-mir-3575 precursor miRNA

Sequence

117548 reads, 0 reads per million, 415 experiments

uggacgccgaugacacaggggcaggggccuccaucauuacccggcaguauuagagacucccaaccagcacccaaacACUGCUGGGUAAGACGAGggccccuacccaaccagucca
(((((.............(((.((((((((.(.((.((((((((((((............................)))))))))))))).).)))))))).))).....)))))

Structure

     gccgaugacacag   c        c a  a            auuagagacuccc 
uggac             ggg aggggccu c uc uuacccggcagu             a
|||||             ||| |||||||| | || ||||||||||||              
accug             ccc uccccggG G AG AAUGGGUCGUCA             a
     --------accaa   a        A C  -            caaacccacgacc 

Annotation confidence Not enough data

Genome context

chr4: 157236759-157236873 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-3575

Mature rno-miR-3575

• Accession: MIMAT0017861
• Description: Rattus norvegicus rno-miR-3575 mature miRNA
• Sequence: 77 - ACUGCUGGGUAAGACGAG - 94
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249