Stem-loop rno-mir-3576

Accession

MI0015448

Description

Rattus norvegicus rno-mir-3576 precursor miRNA

Literature search

1 open access papers mention rno-mir-3576
(1 sentences)

Sequence

reads, None reads per million, experiments

uccgccagggcaguauuugauacucgaaaagaaauuacccuuguaugauucauccaaaagagcaaACACACCAAGGAUAAUUUCUCCucaaguaugaaacaguagcacagcagga
(((((....(((.(.(((.(((((.((..((((((((.(((((..((.....((.....)).....))...))))).))))))))..)).))))).))).).).))...)).)))

Structure

   -  cagg  - g a   g     c  aa        c     -ua  auuca  c 
ucc gc    gc a u uuu auacu ga  agaaauua ccuug   ug     uc a
||| ||    || | | ||| ||||| ||  |||||||| |||||   ||     || a
agg cg    cg u a aaa uauga cu  UCUUUAAU GGAAC   AC     ag a
   a  -aca  a g c   g     a  CC        A     CAC  Aaacg  a 

Annotation confidence Not enough data

Genome context

chr6: 133877812-133877926 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from rno-mir-3576

Mature rno-miR-3576

• Accession: MIMAT0017862
• Description: Rattus norvegicus rno-miR-3576 mature miRNA
• Sequence: 66 - ACACACCAAGGAUAAUUUCUCC - 87
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249