Stem-loop rno-mir-3577

Accession

MI0015449

Description

Rattus norvegicus rno-mir-3577 precursor miRNA

Literature search

4 open access papers mention rno-mir-3577
(6 sentences)

Sequence

2369 reads, 3 reads per million, 340 experiments

acgugguccuuaguggagguuugcuuguuauaggggcuaagaggggccaggcgugccugucaucaUCUGUCCCUCUUGGCCCUUAGgcucggcaugcuaccuauggcauccgu
(((.(((((.(((.(..(((.((((.((..(((((((((((((((((((((....)))).........))))))))))))))))).))..)))).))).)))).)).))))))

Structure

   u   -  u   u ga   u    -u  ua                 ---------    c 
acg ggu cc uag g  ggu ugcu  gu  uaggggcuaagaggggc         cagg g
||| ||| || ||| |  ||| ||||  ||  |||||||||||||||||         ||||  
ugc cua gg auc c  ucg acgg  cg  AUUCCCGGUUCUCCCUG         gucc u
   -   c  u   - -a   u    cu  -G                 UCUacuacu    g 

Annotation confidence Low

Genome context

chr10: 104340708-104340820 [+]

Mature rno-miR-3577

• Accession: MIMAT0017863
• Description: Rattus norvegicus rno-miR-3577 mature miRNA
• Sequence: 66 - UCUGUCCCUCUUGGCCCUUAG - 86
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249