Stem-loop rno-mir-3578

Accession

MI0015451

Description

Rattus norvegicus rno-mir-3578 precursor miRNA

Sequence

132625 reads, 0 reads per million, 419 experiments

ucuccaagcugagcauugauacugagaaaagaucaaccauguauuauucgaagucagcuaaGCGAAUAUAACACGGUCGAUCUcccuucaaguaccagcagaggugccgagcugagg
.(((..((((..((((((.(((((((...(((((.(((.(((..((((((............))))))..))).))).)))))...))).)))).))......))))..))))))).

Structure

u   ca    ga    ------  a    -   aaa     a   a   au      aaguc 
 cuc  agcu  gcau      ug uacu gag   agauc acc ugu  uauucg     a
 |||  ||||  ||||      || |||| |||   ||||| ||| |||  ||||||      
 gag  ucga  cgug      ac auga cuu   UCUAG UGG ACA  AUAAGC     g
g   --    gc    gagacg  c    a   ccc     C   C   AU      Gaauc 

Annotation confidence Not enough data

Genome context

chr6: 133893672-133893788 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-3578

Mature rno-miR-3578

• Accession: MIMAT0017866
• Description: Rattus norvegicus rno-miR-3578 mature miRNA
• Sequence: 62 - GCGAAUAUAACACGGUCGAUCU - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249