Stem-loop rno-mir-3579

Accession

MI0015452

Description

Rattus norvegicus rno-mir-3579 precursor miRNA

Sequence

74476 reads, 0 reads per million, 352 experiments

acccuccacgaaugacuuugauaaugagaagauguggaccauacuacauacgacacagaaguaGCGCAUGUUCUAUGGUCAACCAucuuuucagguaccauggagagagggug
((((((.....((((((.......((((((((((..(((((((..((((.((..((....))..)).))))..)))))))...)))))))))))))..))).....)))))).

Structure

-      cacga   --   uugauaa          -ug       cu    a  ac  a 
 acccuc     aug  acu       ugagaagaug   gaccaua  acau cg  ac g
 ||||||     |||  |||       ||||||||||   |||||||  |||| ||  ||  
 ugggag     uac  ugg       acuuuucuAC   CUGGUAU  UGUA GC  ug a
g      agagg   ca   -------          CAA       CU    C  Ga  a 

Annotation confidence Not enough data

Genome context

chr6: 133860473-133860585 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-3579

Mature rno-miR-3579

• Accession: MIMAT0017867
• Description: Rattus norvegicus rno-miR-3579 mature miRNA
• Sequence: 64 - GCGCAUGUUCUAUGGUCAACCA - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249