Stem-loop rno-mir-3596b

Accession

MI0015455

Description

Rattus norvegicus rno-mir-3596b precursor miRNA

Literature search

2 open access papers mention rno-mir-3596b
(3 sentences)

Sequence

1149743 reads, 0 reads per million, 507 experiments

ggcccuaagaaaggcagcaggucguauaguuaacuccuugugggcaaaaucucugcccuaaAACUAUGCAACCUACUACCUcuuccuaggagccc
(((((((.((((((.((.((((.((((((((......(((.(((((.......)))))))))))))))).)))).)).))).))).)))).))).

Structure

-   -    a   -   c  c    c        aacucc   u     aa 
 ggc ccua gaa agg ag aggu guauaguu      uug gggca  a
 ||| |||| ||| ||| || |||| ||||||||      ||| |||||  u
 ccg ggau cuu UCC UC UCCA CGUAUCAA      aau cccgu  c
c   a    c   c   A  A    A        ------   -     cu 

Annotation confidence Not enough data

Genome context

chr17: 16419981-16420075 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from rno-mir-3596b

Mature rno-miR-3596b

• Accession: MIMAT0017871
• Description: Rattus norvegicus rno-miR-3596b mature miRNA
• Sequence: 62 - AACUAUGCAACCUACUACCU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249